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Species belonging to selected taxon:

Arabidopsis thaliana



ABOUT THIS RECORD

ID: MNEST048166
species: Arabidopsis thaliana
source: PMRD, original name: ath-miRf11066-akr

Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCTCGCAAAATTTGCGAGGGA

miRNA*
CCTCGCAATGTTTGCGATGGA

mismatches: 2
bulges: 1

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pre-miRNA
TCCTCGCAAAATTTGCGAGGGATTTGCAATGAATATTTCTGTAGCAAACCTGCGAGGGAGTTGCAAGTTCCAGCGTTCGTAGTAGCAAATCCCTCGCAAT
GTTTGCGATGGA


dot-bracket secondary structure
((((((((((..(((((((((((((((......(((....)))......(((((((...((((.......)))).)))))))..))))))))))))))).
.))))))).)))



SIMILARITIES
miRBase no hits

PMRD ath-miRf10149-akr: 4e-59

microPC no hits
UniProt no hits

RFAM no hits

Identical with: ath-miRf10149-akr from PMRD (MNEST047249)

MORE

miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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